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|
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Marchani
EE, Watkins WS, Bulayeva K, Harpending HC, Jorde LB.
Culture creates genetic structure in the Caucasus: Autosomal, mitochondrial, and Y-chromosomal
variation in Daghestan.
BMC Genet.
2008 Jul 17;9(1):47.
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Gangwal
K, Sankar S, Hollenhorst PC, Kinsey M, Haroldsen SC, Shah AA, Boucher KM,
Watkins WS, Jorde LB, Graves BJ, Lessnick SL.
Microsatellites as EWS/FLI response elements in Ewing's sarcoma.
Proc
Natl Acad Sci U S A. 2008 Jul 14. [Epub
ahead of print]
|
|
Prahalad
S, Bohnsack JF, Whiting A, Clifford B, Jorde LB, Guthery SL, Thompson SD,
Glass DN, Bamshad MJ.
Lack of association of functional CTLA4 polymorphisms
with juvenile idiopathic arthritis.
Arthritis
Rheum. 2008 Jun 24;58(7):2147-2152.
|
|
Xing
J, Witherspoon DJ, Watkins WS, Zhang Y, Tolpinrud W, Jorde LB.
HapMap tagSNP transferability in multiple populations:
General guidelines.
Genomics.
2008 Jul; 92(1):41-51. Epub 2008 May 14.
|
|
Tong
Z, Yang Z, Patel S, Chen H, Gibbs D, Yang X, Hau VS, Kaminoh Y, Harmon J,
Pearson E, Buehler J, Chen Y, Yu B, Tinkham NH, Zabriskie NA, Zeng J, Luo
L, Sun JK, Prakash M, Hamam RN, Tonna S, Constantine R, Ronquillo CC, Sadda
S, Avery RL, Brand JM, London N, Anduze AL, King GL, Bernstein PS, Watkins
S; Genetics of Diabetes and Diabetic Complication Study Group, Jorde LB, Li
DY, Aiello LP, Pollak MR, Zhang K.
Promoter polymorphism of the erythropoietin gene in
severe diabetic eye and kidney complications.
Proc
Natl Acad Sci U S A. 2008 May 13;105(19):6998-7003. Epub 2008 May 5.
|
|
Xing
J, Witherspoon DJ, Ray DA, Batzer MA, Jorde LB.
Mobile DNA elements in primate and human evolution.
Am
J Phys Anthropol. 2007 Dec; 134(S45):2-19
|
|
Witherspoon
DJ, Wooding S, Rogers AR, Marchani EE, Watkins WS, Batzer MA, Jorde LB.
Genetic Similarities Within and Between Human
Populations.
Genetics. 2007 May;176(1):351-9.
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|
Rogers
AR, Wooding S, Huff CD, Batzer MA, Jorde LB.
Ancestral Alleles and
Population Origins: Inferences Depend on Mutation Rate.
Mol Biol Evol. 2007 Apr;24(4):990-7.
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|
Toydemir
RM, Brassington AE, Bayrak-Toydemir P, Krakowiak PA, Jorde LB, Whitby FG,
Longo N, Viskochil DH, Carey JC, Bamshad MJ.
A novel mutation in FGFR3 causes camptodactyly, tall
stature, and hearing loss (CATSHL) syndrome.
Am J Hum Genet. 2006 Nov;79(5):935-41.
|
|
Toydemir
RM, Chen H, Proud VK, Martin R, van Bokhoven H, Hamel BC, Tuerlings JH,
Stratakis CA, Jorde LB, Bamshad MJ.
Trismus-pseudocamptodactyly syndrome is caused by
recurrent mutation of MYH8.
Am J Med Genet A. 2006 Nov 15;140(22):2387-93.
|
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Witherspoon
DJ, Marchani EE, Watkins WS, Ostler CT, Wooding SP, Anders BA, Fowlkes
JD, Boissinot S, Furano AV, Ray DA, Rogers AR, Batzer MA, Jorde LB.
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|
Human Population Genetic Structure and Diversity
Inferred from Polymorphic L1(LINE-1) and Alu Insertions.
Hum Hered. 2006 Sep 21;62(1):30-46.
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Kim
UK, Wooding S, Riaz N, Jorde LB, Drayna D.
Variation in the human TAS1R taste receptor genes.
Chem Senses. 2006 Sep;31(7):599-611.
|
|
Prahalad
S, Bohnsack JF, Jorde LB, Whiting A, Clifford B, Dunn D, Weiss R, Moroldo
M, Thompson SD, Glass DN, Bamshad MJ.
Association of two functional polymorphisms in the CCR5
gene with juvenile rheumatoid arthritis.
Genes Immun. 2006 Sep;7(6):468-75.
|
|
Toydemir
RM, Rutherford A, Whitby FG, Jorde LB, Carey JC, Bamshad MJ.
Mutations in embryonic myosin heavy chain (MYH3) cause
Freeman-Sheldon syndrome and Sheldon-Hall syndrome.
Nat Genet. 2006 May;38(5):561-5.
|
|
Wooding
S, Jorde LB.
Duplication and divergence in humans and chimpanzees.
Bioessays.
2006 Apr;28(4):335-8.
|
|
Watkins
WS, Prasad BV, Naidu JM, Rao BB, Bhanu BA, Ramachandran B, Das PK, Gai PB,
Reddy PC, Reddy PG, Sethuraman M, Bamshad MJ, Jorde LB.
Diversity and divergence among the tribal populations of
India.
Ann Hum Genet. 2005 Nov;69(Pt
6):680-92.
|
|
Hedges DJ, Cordaux R, Xing J,
Witherspoon DJ, Rogers AR, Jorde LB, Batzer MA.
Modeling the amplification dynamics of human Alu
retrotransposons.
PLoS Comput Biol. 2005
Sep;1(4):e44. Epub 2005 Sep 30.
|
|
Karafet
TM, Lansing JS, Redd AJ, Reznikova S, Watkins JC, Surata SP, Arthawiguna
WA, Mayer L, Bamshad M, Jorde LB, Hammer MF.
Balinese Y-chromosome perspective on the peopling of Indonesia:
genetic contributions from pre-neolithic hunter-gatherers, Austronesian
farmers, and Indian traders.
Hum Biol.
2005 Feb;77(1):93-114.
|
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Kim
U, Wooding S, Ricci D, Jorde LB, Drayna D.
Worldwide haplotype diversity and coding sequence
variation at human bitter taste receptor loci.
Hum Mutat. 2005 Sep;26(3):199-204.
|
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Shriver
MD, Mei R, Parra EJ, Sonpar V, Halder I, Tishkoff SA, Schurr TG, Zhadanov
SI, Osipova LP, Brutsaert TD, Friedlaender J, Jorde LB, Watkins WS, Bamshad
MJ, Gutierrez G, Loi H, Matsuzaki H, Kittles RA, Argyropoulos G, Fernandez
JR, Akey JM, Jones KW.
Large-scale SNP analysis reveals clustered and
continuous patterns of human genetic variation.
Hum Genomics. 2005 Jun;2(2):81-9.
|
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Nakajima
T, Wooding S, Satta Y, Jinnai N, Goto S, Hayasaka I, Saitou N, Guan-Jun J,
Tokunaga K, Jorde LB, Emi M, Inoue I.
Evidence for natural selection in the HAVCR1 gene: high
degree of amino-acid variability in the mucin domain of human HAVCR1
protein.
Genes Immun. 2005 Aug;6(5):398-406.
|
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Jorde
LB.
Evolution. Where we're hot, they're not.
Science. 2005 Apr 1;308(5718):60-2.
|
|
Wooding
S, Stone AC, Dunn DM, Mummidi S, Jorde LB, Weiss RK, Ahuja S, Bamshad MJ.
Contrasting effects of natural selection on human and
chimpanzee CC chemokine receptor 5.
Am J Hum Genet. 2005 Feb;76(2):291-301.
Epub 2004 Dec 29. Erratum in: Am J Hum Genet. 2005 Apr;76(4):715.
|
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Carter
AB, Salem AH, Hedges DJ, Keegan CN, Kimball B, Walker JA, Watkins WS, Jorde
LB, Batzer MA.
Genome-wide analysis of the human Alu Yb-lineage.
Hum Genomics. 2004 Mar;1(3):167-78.
|
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Jorde
LB.
Genetic variation and cardiovascular care.
Manag Care. 2004 Oct;13(10 Suppl):9-12.
|
|
Jorde
LB, Wooding SP.
Genetic variation, classification and 'race'.
Nat Genet. 2004 Nov;36(11 Suppl):S28-33.
|
|
Wooding
S, Ostler C, Prasad BV, Watkins WS, Sung S, Bamshad M, Jorde LB.
Directional migration in the Hindu castes: inferences
from mitochondrial, autosomal and Y-chromosomal data.
Hum Genet. 2004 Aug;115(3):221-9. Epub 2004 Jul 1.
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Sakagami
T, Witherspoon DJ, Nakajima T, Jinnai N, Wooding S, Jorde LB, Hasegawa T,
Suzuki E, Gejyo F, Inoue I.
Local adaptation and population differentiation at the
interleukin 13 and interleukin 4 loci.
Genes Immun. 2004 Aug;5(5):389-97.
|
|
Nakajima
T, Wooding S, Sakagami T, Emi M, Tokunaga K, Tamiya G, Ishigami T, Umemura
S, Munkhbat B, Jin F, Guan-Jun J, Hayasaka I, Ishida T, Saitou N, Pavelka
K, Lalouel JM, Jorde LB, Inoue I.
Natural selection and population history in the human
angiotensinogen gene (AGT): 736 complete AGT sequences in chromosomes from
around the world.
Am J Hum Genet. 2004 May;74(5):898-916. Epub 2004 Apr 9.
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Bulayeva
K, Jorde LB, Ostler C, Watkins S, Bulayev O, Harpending H.
Genetics and population history of Caucasus
populations.
Hum Biol. 2003 Dec;75(6):837-53.
|
|
Xing
J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB,
Jurka J, Jorde LB, Batzer MA.
Comprehensive analysis of two Alu Yd subfamilies.
J Mol Evol. 2003;57 Suppl 1:S76-89.
|
|
Wooding
S, Kim UK, Bamshad MJ, Larsen J, Jorde LB, Drayna D.
Natural selection and molecular evolution in PTC, a
bitter-taste receptor gene.
Am J Hum Genet. 2004 Apr;74(4):637-46. Epub 2004 Mar 2.
|
|
Callinan
PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad
MJ, Jorde LB, Batzer MA.
Comprehensive analysis of Alu-associated diversity on
the human sex chromosomes.
Gene. 2003 Oct 23;317(1-2):103-10.
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|
Salem
AH, Ray DA, Xing J, Callinan PA, Myers JS, Hedges DJ, Garber RK,
Witherspoon DJ, Jorde LB, Batzer MA.
Alu elements and hominid phylogenetics.
Proc Natl Acad Sci U S A. 2003 Oct 28;100(22):12787-91. Epub 2003 Oct 15.
|
|
Toomajian
C, Ajioka RS, Jorde LB, Kushner JP, Kreitman M.
A method for detecting recent selection in the human
genome from allele age estimates.
Genetics. 2003 Sep;165(1):287-97.
|
|
Sung
SS, Brassington AM, Krakowiak PA, Carey JC, Jorde LB, Bamshad M.
Mutations in TNNT3 cause multiple congenital
contractures: a second locus for distal arthrogryposis type 2B.
Am J Hum Genet. 2003 Jul;73(1):212-4.
|
|
Watkins
WS, Rogers AR, Ostler CT, Wooding S, Bamshad MJ, Brassington AM, Carroll
ML, Nguyen SV, Walker JA, Prasad BV, Reddy PG, Das PK, Batzer MA, Jorde LB.
Genetic variation among world populations: inferences
from 100 Alu insertion polymorphisms.
Genome Res. 2003 Jul;13(7):1607-18. Epub 2003 Jun 12.
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|
Brassington
AM, Sung SS, Toydemir RM, Le T, Roeder AD, Rutherford AE, Whitby FG, Jorde
LB, Bamshad MJ.
Expressivity of Holt-Oram syndrome is not predicted by
TBX5 genotype.
Am J Hum Genet. 2003 Jul;73(1):74-85. Epub 2003 Jun 3.
|
|
Salem
AH, Kilroy GE, Watkins WS, Jorde LB, Batzer MA.
Recently integrated Alu elements and human genomic
diversity.
Mol Biol Evol. 2003 Aug;20(8):1349-61. Epub 2003 May 30.
|
|
Vincent
BJ, Myers JS, Ho HJ, Kilroy GE, Walker JA, Watkins WS, Jorde LB, Batzer MA.
Following the LINEs: an analysis of primate genomic
variation at human-specific LINE-1 insertion sites.
Mol Biol Evol. 2003 Aug;20(8):1338-48. Epub 2003 May 30.
|
|
Sung
SS, Brassington AM, Grannatt K, Rutherford A, Whitby FG, Krakowiak PA,
Jorde LB, Carey JC, Bamshad M.
Mutations in genes encoding fast-twitch contractile
proteins cause distal arthrogryposis syndromes.
Am J Hum Genet. 2003 Mar;72(3):681-90.
|
|
Salem
AH, Myers JS, Otieno AC, Watkins WS, Jorde LB, Batzer MA.
LINE-1 preTa elements in the human genome.
J Mol Biol. 2003 Feb 28;326(4):1127-46.
|
|
Bamshad
MJ, Wooding S, Watkins WS, Ostler CT, Batzer MA, Jorde LB.
Human population genetic structure and inference of
group membership.
Am J Hum Genet. 2003 Mar;72(3):578-89. Epub 2003 Jan 28.
|
|
Wooding
SP, Watkins WS, Bamshad MJ, Dunn DM, Weiss RB, Jorde LB.
DNA sequence variation in a 3.7-kb noncoding sequence 5'
of the CYP1A2 gene: implications for human population history and natural
selection.
Am J Hum Genet. 2002 Sep;71(3):528-42. Epub 2002 Aug 9.
|
|
Lum JK, Jorde LB, Schiefenhovel W.
Affinities among Melanesians, Micronesians, and
Polynesians: a neutral biparental genetic perspective.
Hum Biol. 2002 Jun;74(3):413-30.
|
|
Bamshad
MJ, Mummidi S, Gonzalez E, Ahuja SS, Dunn DM, Watkins WS, Wooding S, Stone
AC, Jorde LB, Weiss RB, Ahuja SK.
A strong signature of balancing selection in the 5'
cis-regulatory region of CCR5.
Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10539-44. Epub 2002 Jul 29.
|
|
Myers
JS, Vincent BJ, Udall H, Watkins WS, Morrish TA, Kilroy GE, Swergold GD,
Henke J, Henke L, Moran JV, Jorde LB, Batzer MA.
A comprehensive analysis of recently integrated human Ta
L1 elements.
Am J Hum Genet. 2002 Aug;71(2):312-26. Epub 2002 Jun 17.
|
|
Yu
N, Chen FC, Ota S, Jorde LB, Pamilo P, Patthy L, Ramsay M, Jenkins T, Shyue
SK, Li WH.
Larger genetic differences within africans than between
Africans and Eurasians.
Genetics. 2002 May;161(1):269-74.
|
|
Luo
HR, Lu XM, Yao YG, Horie N, Takeishi K, Jorde LB, Zhang YP.
Length polymorphism of thymidylate synthase regulatory
region in Chinese populations and evolution of the novel alleles.
Biochem Genet. 2002 Feb;40(1-2):41-51.
|
|
Redd
AJ, Roberts-Thomson J, Karafet T, Bamshad M, Jorde LB, Naidu JM, Walsh B,
Hammer MF.
Gene flow from the Indian subcontinent to Australia:
evidence from the Y chromosome.
Curr Biol. 2002 Apr 16;12(8):673-7.
|
|
Wooding
S, Rogers A.
The matrix coalescent and an application to human
single-nucleotide polymorphisms.
Genetics. 2002 Aug;161(4):1641-50. Download pdf
|
|
Nakajima T, Jorde LB, Ishigami T,
Umemura S, Emi M, Lalouel JM, Inoue I.
Nucleotide diversity and haplotype structure of the
human angiotensinogen gene in two populations.
Am J Hum Genet. 2002 Jan;70(1):108-23. Epub 2001 Nov 30. Download pdf
|
|
Jorde
LB, Watkins WS, Bamshad MJ.
Population genomics: a bridge from evolutionary history
to genetic medicine.
Hum Mol Genet. 2001 Oct 1;10(20):2199-207. Download
pdf
|
|
Jorde
LB.
Consanguinity and prereproductive mortality in the Utah
Mormon population.
Hum Hered. 2001;52(2):61-5. Download pdf
|
|
Carroll
ML, Roy-Engel AM, Nguyen SV, Salem AH, Vogel E, Vincent B, Myers J, Ahmad
Z, Nguyen L, Sammarco M, Watkins WS, Henke J, Makalowski W, Jorde LB,
Deininger PL, Batzer MA.
Large-scale analysis of the Alu Ya5 and Yb8 subfamilies
and their contribution to human genomic diversity.
J Mol Biol. 2001 Aug 3;311(1):17-40. Download
pdf
|
|
Bamshad
M, Kivisild T, Watkins WS, Dixon ME, Ricker CE, Rao BB, Naidu JM, Prasad
BV, Reddy PG, Rasanayagam A, Papiha SS, Villems R, Redd AJ, Hammer MF,
Nguyen SV, Carroll ML, Batzer MA, Jorde LB.
Genetic evidence on the origins of Indian caste
populations.
Genome Res. 2001 Jun;11(6):994-1004. [Download
commentary by P. Majumder] Download
pdf
|
|
Jorde
LB, Shortsleeve PA, Henry JW, Vanburen RT, Hutchinson LE, Rigley TM.
Genetic analysis of the Utah population: a comparison of STR and
VNTR loci.
Hum Biol. 2000 Dec;72(6):927-36.
|
|
Watkins
WS, Ricker CE, Bamshad MJ, Carroll ML, Nguyen SV, Batzer MA, Harpending HC,
Rogers AR, Jorde LB.
Patterns of ancestral human diversity: an analysis of
Alu-insertion and restriction-site polymorphisms.
Am J Hum Genet. 2001 Mar;68(3):738-52. Epub 2001 Feb 15. Download pdf
|
|
Yu
N, Zhao Z, Fu YX, Sambuughin N, Ramsay M, Jenkins T, Leskinen E, Patthy L, Jorde
LB, Kuromori T, Li WH. Global patterns of human DNA sequence variation
in a 10-kb region on chromosome 1.
Mol Biol Evol. 2001 Feb;18(2):214-22. Download pdf
|
|
Fischer
PR, Thacher TD, Pettifor JM, Jorde LB, Eccleshall TR, Feldman D.
Vitamin D receptor polymorphisms and nutritional rickets
in Nigerian children.
J Bone Miner Res. 2000 Nov;15(11):2206-10.
|
|
Bulaj
ZJ, Ajioka RS, Phillips JD, LaSalle BA, Jorde LB, Griffen LM, Edwards CQ,
Kushner JP.
Disease-related conditions in relatives of patients with
hemochromatosis.
N Engl J Med. 2000 Nov 23;343(21):1529-35.
|
|
Jorde
LB.
Linkage disequilibrium and the search for complex
disease genes.
Genome Res. 2000 Oct;10(10):1435-44. Download pdf
|
|
Zhao
Z, Jin L, Fu YX, Ramsay M, Jenkins T, Leskinen E, Pamilo P, Trexler M,
Patthy L, Jorde LB, Ramos-Onsins S, Yu N, Li WH. Worldwide DNA sequence
variation in a 10-kilobase noncoding region on human chromosome 22.
Proc Natl Acad Sci U S A. 2000 Oct 10;97(21):11354-8. Download pdf
|
|
Kivisild
T, Villems R, Jorde LB, Bamshad M, Kumar S, Hedrick P, Dowling T, Stoneking
M, Parsons TJ, Irwin JA, Awadalla P, Eyre-Walker A, Smith JM.
Questioning Evidence for Recombination in Human
Mitochondrial DNA.
Science. 2000 Jun 16;288(5473):1931a. Download pdf
|
|
Jorde
LB, Watkins WS, Bamshad MJ, Dixon ME, Ricker CE, Seielstad MT, Batzer MA.
The distribution of human genetic diversity: a
comparison of mitochondrial, autosomal, and Y-chromosome data.
Am J Hum Genet. 2000 Mar;66(3):979-88. Download
pdf
|
|
Bamshad
M, Jorde LB, Carey JC.
Getting a LEAD on EEC.
Am J Med Genet. 2000 Jan 17;90(2):183-4.
|
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Jorde LB, Watkins WS, Kere J, Nyman D,
Eriksson AW.
Gene mapping in isolated populations: new roles for old
friends?
Hum Hered. 2000 Jan-Feb;50(1):57-65.
|
|
Wooding
S.
PRoMT: inferring demographic history from DNA sequences.
Bioinformatics. 2000
Mar;16(3):298-9. Download pdf
|
|
Wooding
S, Rogers A.
A Pleistocene population X-plosion?
Hum Biol.
2000 Aug;72(4):693-5. Download pdf
|
|
Ding
YC, Wooding S, Harpending HC, Chi HC, Li HP, Fu YX, Pang JF, Yao YG, Yu JG,
Moyzis R, Zhang Y. Population structure and history in East Asia.
Proc Natl Acad Sci U S A. 2000 Dec 5;97(25):14003-6 Download
pdf
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Watkins WS, Bamshad M, Dixon ME, Bhaskara Rao B, Naidu
JM, Reddy PG, Prasad BV, Das PK, Reddy PC, Gai PB, Bhanu A, Kusuma YS, Lum
JK, Fischer P, Jorde LB. (1999)
Multiple Origins of the mtDNA 9-bp Deletion in
Populations of South India. Am. J. Phys. Anthropol. 109:147-58 Download pdf
|
|
Bamshad M, Le T, Watkins WS, Dixon ME, Kramer BE, Roeder
AD, Carey JC, Root S, Schinzel A, Van Maldergem L, Gardner RJ, Lin RC,
Seidman CE, Seidman JG, Wallerstein R, Moran E, Sutphen R, Campbell CE,
Jorde LB. (1999)
The spectrum of mutations in TBX3: Genotype/Phenotype
relationship in ulnar-mammary syndrome. Am. J. Hum. Genet.
64:1550-62 Download pdf
|
|
L.B. Jorde,W.S. Watkins, J. Kere, D. Nyman, A.W.
Eriksson. (1999)
Gene Mapping in Isolated Populations: New Roles for Old
Friends? Human Heredity 50:57-65 Download
pdf
|
|
Lynn B. Jorde, Michael Bamshad, and Alan R. Rogers.
(1998)
Using mitochondrial and nuclear DNA markers to
reconstruct human evolution BioEssays 20:126-136 Download pdf
|
|
Kivisild T, Bamshad MJ, Kaldma K, Metspalu M, Metspalu
E, Reidla M, Laos S, Parik J, Watkins WS, Dixon ME, Papiha SS, Mastana SS,
Mir MR, Ferak V, Villems R. (1999)
Deep common ancestry of indian and western-Eurasian
mitochondrial DNA lineages. Curr Biol. 9:1331-4 Download pdf
|
|
Gonzalez E, Bamshad M, Sato N, Mummidi S, Dhanda R,
Catano G, Cabrera S, McBride M, Cao XH, Merrill G, O'Connell P, Bowden DW,
Freedman BI, Anderson SA, Walter EA, Evans JS, Stephan KT, Clark RA, Tyagi
S, Ahuja SS, Dolan MJ, Ahuja SK. (1998)
Race-specific HIV-1 disease-modifying effects associated
with CCR5 haplotypes. Proc. Natl. Acad. Sci. 96:12004-12009 Download pdf
|
|
Bamshad MJ, Watkins WS, Dixon ME, Jorde LB, Rao BB,
Naidu JM, Prasad BV, Rasanayagam A, Hammer MF. (1998)
Female gene flow stratifies Hindu castes. Nature
395:651-2 Download pdf
|
|
Harpending HC, Batzer MA, Gurven M, Jorde LB, Rogers AR, Sherry ST.
(1998)
Genetic
traces of ancient demography. Proc. Natl. Acad. Sci. USA
95:1961-7 Download pdf
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Jorde LB, Rogers AR, Bamshad M, Watkins WS, Krakowiak P,
Sung S, Kere J, Harpending HC. (1997)
Microsatellite diversity and the demographic history of
modern humans. Proc. Natl. Acad. Sci. USA.
94:3100-3 Download pdf
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Wooding, S., Ward, R.H. (1997)
Phylogeography and Pleistocene evolution in the North
American black bear. Molecular Biology and Evolution
14:1096-1105 Download pdf
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